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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
302
ATAC-seq
179
DNase-seq
28
snATAC-seq
4
FAIRE-seq
Assay category
1365
Transcription
DNA binding
513
DNA accessibility
20
3D chromatin structure
13
DNA methylation
Date released
163
June, 2019
93
February, 2023
82
August, 2021
39
May, 2022
25
November, 2019
24
October, 2019
12
February, 2021
11
May, 2023
10
April, 2020
10
November, 2018
8
January, 2021
8
July, 2019
8
October, 2017
6
August, 2017
5
May, 2021
4
March, 2019
2
January, 2018
2
March, 2020
1
August, 2022
Available data
411
bed narrowPeak
263
bam
237
bigWig
187
bigBed narrowPeak
181
bed bed3+
179
bed broadPeak
177
bigBed broadPeak
64
xls
42
fastq
10
bed bed3
7
bed bedgraph
4
txt
1
tsv
Organism
512
Homo sapiens
Biosample type
470
tissue
288
primary cell
43
in vitro differentiated cells
31
cell line
Organ
150
kidney
82
pancreas
66
heart
44
limb
43
blood vessel
43
vasculature
41
artery
34
musculature of body
32
brain
31
eye
26
connective tissue
25
liver
18
ureter
12
bone element
12
epithelium
12
skeleton
10
lung
8
adipose tissue
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
482
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
353
GRCh38
331
hg19
Lab
348
AMP-T2D consortium
81
Katalin Susztak, Upenn
44
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
12
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
513 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 60 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
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