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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
snATAC-seq
31
DNase-seq
FAIRE-seq
Assay category
436
Transcription
279
DNA binding
231
DNA accessibility
DNA methylation
10
3D chromatin structure
Date released
100
May, 2020
39
May, 2022
24
June, 2019
14
September, 2018
13
May, 2021
12
February, 2023
7
August, 2020
6
October, 2019
5
August, 2017
5
September, 2017
3
September, 2020
2
November, 2020
1
February, 2021
Available data
113
bam
107
bigWig
68
bed narrowPeak
51
bigBed narrowPeak
39
zippedFastqFolder
33
fastq
28
bed broadPeak
28
bigBed broadPeak
27
bed bed3+
12
tsv
1
bed bed3
Organism
231
Homo sapiens
Biosample type
438
tissue
231
primary cell
43
in vitro differentiated cells
31
cell line
Organ
90
epithelium
71
pancreas
12
kidney
8
connective tissue
6
vasculature
5
brain
4
blood vessel
3
heart
3
liver
2
vein
1
eye
1
musculature of body
Project
182
AMP
49
HPAP
Genome assembly (visualization)
106
hg19
76
GRCh38
Lab
182
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
15
inconsistent ontology term
assay_slims!
DNA methylation
assay_title!
FAIRE-seq
snATAC-seq
BIOSAMPLE
ASSAY
231 results
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ATAC-seq
DNase-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
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