Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
56
snATAC-seq
3
DNase-seq
1
FAIRE-seq
Assay category
281
Transcription
189
DNA accessibility
188
DNA binding
DNA methylation
7
3D chromatin structure
Date released
100
May, 2020
28
February, 2021
21
May, 2022
13
May, 2021
12
February, 2023
8
January, 2021
5
October, 2019
1
August, 2017
1
November, 2020
Available data
92
bam
76
bigWig
47
bed narrowPeak
30
bigBed narrowPeak
28
bed broadPeak
bigBed broadPeak
28
fastq
27
bed bed3+
21
zippedFastqFolder
12
tsv
1
bed bed3
1
tar
Organism
189
Homo sapiens
Biosample type
218
tissue
189
primary cell
42
in vitro differentiated cells
11
cell line
Organ
75
epithelium
pancreas
8
blood
8
bodily fluid
2
connective tissue
2
kidney
1
blood vessel
1
liver
1
vasculature
1
vein
Project
133
AMP
48
HPAP
8
T1D
Genome assembly (visualization)
64
hg19
17
GRCh38
Lab
133
AMP-T2D consortium
48
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
12
inconsistent ontology term
assay_slims!
DNA methylation
files.file_type!
bigBed broadPeak
organ_slims!
pancreas
BIOSAMPLE
ASSAY
189 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
+ See 36 more…
See all biosamples
Download