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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ATAC-seq
27
snATAC-seq
2
FAIRE-seq
1
DNase-seq
Assay category
771
DNA binding
371
Transcription
89
DNA accessibility
DNA methylation
1
3D chromatin structure
Date released
27
February, 2021
18
May, 2022
14
September, 2018
7
August, 2017
7
August, 2020
7
October, 2017
5
September, 2017
3
September, 2020
1
November, 2018
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
89
Homo sapiens
Biosample type
59
primary cell
30
tissue
Organ
57
pancreas
32
epithelium
2
adipose tissue
2
connective tissue
1
brain
1
liver
1
spleen
Project
52
AMP
37
HPAP
Genome assembly (visualization)
51
hg19
42
GRCh38
Lab
37
Klaus Kaestner, Upenn
34
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
27
audit script error
assay_slims!
DNA methylation
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
89 results
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ATAC-seq
snATAC-seq
FAIRE-seq
DNase-seq
primary cell
Langerhans cell
27
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
tissue
islet of Langerhans
18
1
1
body of pancreas
4
cerebellum (Hemisphere)
1
omental fat pad
1
pancreas
1
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