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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ATAC-seq
27
snATAC-seq
10
DNase-seq
1
FAIRE-seq
Assay category
608
Transcription
253
DNA binding
86
DNA accessibility
15
3D chromatin structure
DNA methylation
Date released
187
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
33
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
33
bam
33
bed narrowPeak
27
fastq
19
bigWig
12
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
4
bed bedgraph
2
bed bed3
2
tsv
1
tar
Organism
86
Homo sapiens
Biosample type
35
primary cell
30
tissue
13
cell line
8
in vitro differentiated cells
Organ
14
blood vessel
14
vasculature
12
limb
11
artery
9
epithelium
8
bone element
8
connective tissue
8
heart
8
pancreas
8
skeleton
3
kidney
3
nerve
3
vein
2
liver
1
adipose tissue
1
brain
1
eye
1
pituitary gland
1
skin of body
Project
59
AMP
27
HPAP
Genome assembly (visualization)
44
hg19
32
GRCh38
Lab
59
AMP-T2D consortium
27
Klaus Kaestner, Upenn
Audit category:
27
audit script error
6
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
86 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
27
endothelial cell of umbilical vein
2
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
kidney glomerular epithelial cell
1
+ See 2 more…
tissue
islet of Langerhans
15
tibial artery
1
2
tibial nerve
1
2
adipose tissue
1
distal epiphysis
1
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
2
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
6
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
See all biosamples
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