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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ATAC-seq
27
snATAC-seq
10
DNase-seq
2
FAIRE-seq
Assay category
767
DNA binding
Transcription
98
DNA accessibility
18
DNA methylation
1
3D chromatin structure
Date released
27
February, 2021
18
May, 2022
14
September, 2018
9
November, 2018
7
August, 2017
7
August, 2020
7
October, 2017
5
September, 2017
3
September, 2020
1
March, 2019
Available data
475
bed narrowPeak
375
bam
332
bigWig
228
bigBed narrowPeak
199
bed broadPeak
197
bed bed3+
197
bigBed broadPeak
98
fastq
64
xls
60
zippedFastqFolder
14
tsv
6
bed bed3
4
txt
3
bed bedgraph
1
tar
Organism
98
Homo sapiens
Biosample type
60
primary cell
38
tissue
Organ
61
pancreas
32
epithelium
connective tissue
4
liver
3
adipose tissue
3
brain
2
spleen
Project
61
AMP
37
HPAP
Genome assembly (visualization)
59
hg19
49
GRCh38
Lab
41
AMP-T2D consortium
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
assay_slims!
Transcription
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
98 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
27
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 1 more…
tissue
islet of Langerhans
20
1
1
body of pancreas
4
2
brain
2
liver
2
right lobe of liver
1
1
+ See 3 more…
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