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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
56
snATAC-seq
WGBS
26
DNase-seq
9
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
433
Transcription
283
DNA accessibility
270
DNA binding
10
DNA methylation
7
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
28
February, 2021
19
June, 2019
14
May, 2021
14
September, 2018
12
February, 2023
8
January, 2021
8
July, 2019
7
August, 2020
7
October, 2019
6
August, 2017
5
September, 2017
3
September, 2020
2
November, 2020
Available data
109
bam
103
bigWig
64
bed narrowPeak
61
fastq
60
zippedFastqFolder
47
bigBed narrowPeak
23
bed broadPeak
23
bigBed broadPeak
22
bed bed3+
12
tsv
9
bed bedMethyl
9
bigBed bedMethyl
1
bed bed3
1
tar
Organism
293
Homo sapiens
Biosample type
448
tissue
293
primary cell
43
in vitro differentiated cells
31
cell line
Organ
97
epithelium
71
pancreas
15
kidney
9
connective tissue
8
blood
8
bodily fluid
8
vasculature
brain
5
blood vessel
4
heart
4
liver
3
vein
2
eye
2
musculature of body
Project
188
AMP
97
HPAP
8
T1D
Genome assembly (visualization)
111
hg19
71
GRCh38
Lab
188
AMP-T2D consortium
97
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
17
inconsistent ontology term
assay_title!
WGBS
organ_slims!
brain
BIOSAMPLE
ASSAY
293 results
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ATAC-seq
snATAC-seq
DNase-seq
RRBS
DNAme array
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
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