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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
ATAC-seq
212
DNase-seq
83
snATAC-seq
75
WGBS
21
RRBS
5
FAIRE-seq
Assay category
1716
Transcription
1693
DNA binding
771
DNA accessibility
96
DNA methylation
32
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
140
May, 2022
105
February, 2023
100
May, 2020
82
August, 2021
55
February, 2021
35
July, 2019
May, 2021
33
October, 2019
26
August, 2017
November, 2019
17
November, 2018
16
January, 2021
14
September, 2018
11
May, 2023
10
April, 2020
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
August, 2022
Available data
453
bed narrowPeak
368
bam
362
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
123
fastq
101
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
866
Homo sapiens
Biosample type
487
tissue
332
primary cell
33
in vitro differentiated cells
15
cell line
Organ
189
pancreas
167
kidney
159
epithelium
87
heart
61
vasculature
58
blood vessel
49
artery
45
limb
41
musculature of body
40
connective tissue
39
brain
36
liver
33
eye
18
ureter
13
adipose tissue
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
4
spleen
3
nerve
3
vein
1
pericardium
1
pituitary gland
1
skin of body
Project
684
AMP
144
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
428
hg19
419
GRCh38
Lab
555
AMP-T2D consortium
144
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
47
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
28
audit script error
25
inconsistent ontology term
1
inconsistent replicate
month_released!
August, 2022
May, 2021
November, 2019
BIOSAMPLE
ASSAY
867 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
WGBS
RRBS
FAIRE-seq
tissue
kidney
75
13
6
1
1
islet of Langerhans
49
1
6
1
1
coronary artery
36
2
liver
20
2
3
1
heart
18
1
+ See 63 more…
primary cell
pancreatic alpha cell
35
31
Langerhans cell
48
pancreatic beta cell
23
16
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 6 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
2
HepG2
1
1
GM12878
1
Panc1
1
+ See 1 more…
See all biosamples
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