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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
total RNA-seq
134
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
12
DNase-seq
2
FAIRE-seq
Assay category
438
DNA binding
366
Transcription
102
DNA accessibility
20
DNA methylation
Date released
98
August, 2017
76
February, 2023
50
July, 2018
44
April, 2018
41
September, 2018
41
September, 2020
39
February, 2021
24
May, 2022
15
February, 2018
11
November, 2018
8
October, 2017
7
August, 2020
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2019
Available data
1679
bam
1643
bigWig
1444
tsv
480
bed narrowPeak
468
fastq
239
bigBed narrowPeak
210
bed bed3+
207
bed broadPeak
205
bigBed broadPeak
112
zippedFastqFolder
76
txt
64
xls
11
bed bed3
8
csv
7
bed bedgraph
1
tar
0
tagAlign bed3+
Organism
468
Homo sapiens
Biosample type
308
primary cell
144
tissue
16
in vitro differentiated cells
cell line
Organ
314
pancreas
179
epithelium
7
connective tissue
4
embryo
4
liver
3
adipose tissue
3
brain
2
spleen
Project
305
AMP
163
HPAP
Genome assembly (visualization)
295
hg19
285
GRCh38
Lab
279
AMP-T2D consortium
163
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
7
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
468 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
12
13
Langerhans cell
34
27
pancreatic beta cell
21
12
10
exocrine cell
39
pancreatic acinar cell
4
9
5
+ See 14 more…
tissue
islet of Langerhans
97
6
20
1
1
body of pancreas
4
2
brain
2
liver
2
omental fat pad
1
1
+ See 5 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 3 more…
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