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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
17
total RNA-seq
8
snATAC-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
1
FAIRE-seq
Assay category
218
DNA binding
45
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
30
June, 2019
13
July, 2019
12
February, 2020
8
January, 2021
2
November, 2018
2
October, 2019
1
February, 2023
1
October, 2017
Available data
47
bam
47
bigWig
33
bed narrowPeak
33
bigBed narrowPeak
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
24
tsv
3
fastq
1
bed bed3
Organism
69
Homo sapiens
Biosample type
53
tissue
16
primary cell
cell line
Organ
599
pancreas
515
connective tissue
409
adipose tissue
283
kidney
270
epithelium
207
liver
183
heart
74
bone element
65
vasculature
63
blood vessel
61
brain
51
eye
51
limb
47
artery
44
musculature of body
19
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
8
nerve
6
embryo
3
vein
2
spleen
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
61
AMP
8
T1D
Genome assembly (visualization)
46
GRCh38
36
hg19
Lab
61
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
69 results
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DNase-seq
total RNA-seq
snATAC-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
brain
14
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
Ammon's horn
1
1
caudate nucleus
1
1
+ See 19 more…
primary cell
peripheral blood mononuclear cell
8
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 3 more…
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