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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
total RNA-seq
10
ATAC-seq
1
DNase-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
469
DNA binding
81
Transcription
11
DNA accessibility
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Date released
61
February, 2021
17
August, 2021
5
January, 2019
4
October, 2019
2
March, 2020
2
March, 2023
1
January, 2018
Available data
80
bam
79
tsv
72
bigWig
10
bed narrowPeak
5
fastq
1
bed bed3
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
90
Homo sapiens
Biosample type
1683
tissue
470
primary cell
179
in vitro differentiated cells
92
cell line
2
stem cell
Organ
60
artery
60
blood vessel
60
heart
60
vasculature
epithelium
53
pancreas
15
liver
8
embryo
5
kidney
1
blood
1
bodily fluid
Project
90
AMP
2
community
Genome assembly (visualization)
81
hg19
80
GRCh38
Lab
81
AMP-T2D consortium
9
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
3
inconsistent ontology term
1
inconsistent replicate
organ_slims!
epithelium
BIOSAMPLE
ASSAY
92 results
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total RNA-seq
ATAC-seq
DNase-seq
shRNA RNA-seq
siRNA RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
HepG2
14
1
H1-hESC
8
EndoC-BH1
1
1
early embryonic cell
2
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