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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
199
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
2
small RNA-seq
1
FAIRE-seq
Assay category
436
Transcription
287
DNA accessibility
279
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
93
May, 2022
88
February, 2023
68
May, 2021
59
September, 2020
48
July, 2018
43
April, 2018
41
September, 2018
40
February, 2021
24
June, 2019
18
July, 2019
9
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
August, 2017
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
366
bam
362
bigWig
308
fastq
264
tsv
112
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
29
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
2
csv
bed bed3
1
tar
Organism
723
Homo sapiens
Biosample type
1692
tissue
723
primary cell
176
in vitro differentiated cells
145
cell line
2
stem cell
Organ
254
epithelium
226
pancreas
22
connective tissue
18
kidney
9
vasculature
8
blood
8
bodily fluid
8
brain
8
liver
7
blood vessel
7
heart
3
musculature of body
3
vein
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
345
AMP
274
HPAP
104
T1D
Genome assembly (visualization)
360
hg19
327
GRCh38
Lab
343
AMP-T2D consortium
274
Klaus Kaestner, Upenn
106
Kyle Gaulton, UCSD
Audit category:
27
audit script error
26
inconsistent ontology term
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
723 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
monocyte
54
15
pancreatic beta cell
21
23
12
exocrine cell
39
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