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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
185
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
2
small RNA-seq
1
FAIRE-seq
Assay category
434
Transcription
288
DNA accessibility
279
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
93
May, 2022
88
February, 2023
68
May, 2021
59
September, 2020
48
July, 2018
43
April, 2018
41
February, 2021
40
September, 2018
24
June, 2019
18
July, 2019
9
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
August, 2017
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
Available data
366
bam
362
bigWig
308
fastq
264
tsv
112
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
29
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
csv
1
bed bed3
1
tar
Organism
722
Homo sapiens
Biosample type
1672
tissue
722
primary cell
181
in vitro differentiated cells
146
cell line
2
stem cell
Organ
254
epithelium
226
pancreas
23
connective tissue
18
kidney
9
vasculature
8
blood
8
bodily fluid
8
brain
8
liver
7
blood vessel
7
heart
3
musculature of body
3
vein
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
344
AMP
274
HPAP
104
T1D
Genome assembly (visualization)
361
hg19
328
GRCh38
Lab
342
AMP-T2D consortium
274
Klaus Kaestner, Upenn
106
Kyle Gaulton, UCSD
Audit category:
27
audit script error
26
inconsistent ontology term
files.file_type!
csv
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
722 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
monocyte
54
15
pancreatic beta cell
21
23
12
exocrine cell
39
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