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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
22
ATAC-seq
6
DNase-seq
3
small RNA-seq
1
single cell RNA-seq
Assay category
547
DNA binding
192
Transcription
28
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
143
May, 2020
40
May, 2022
9
August, 2021
7
July, 2019
5
December, 2019
5
January, 2019
3
November, 2018
2
August, 2017
2
February, 2021
2
June, 2019
October, 2019
1
February, 2020
1
March, 2020
Available data
187
bigWig
171
tsv
168
bam
27
bed narrowPeak
9
fastq
6
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bed3
1
csv
Organism
220
Homo sapiens
Biosample type
198
tissue
15
cell line
7
primary cell
Organ
648
pancreas
512
connective tissue
408
adipose tissue
314
epithelium
279
kidney
241
heart
220
liver
119
vasculature
117
blood vessel
104
artery
74
bone element
59
brain
44
musculature of body
41
limb
36
eye
19
lung
18
ureter
16
skeleton
14
embryo
9
blood
9
bodily fluid
2
spleen
1
nerve
1
pericardium
1
spinal cord
Project
220
AMP
Genome assembly (visualization)
188
hg19
168
GRCh38
Lab
171
AMP-T2D consortium
40
Karen Mohlke, UNC
9
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
month_released!
October, 2019
BIOSAMPLE
ASSAY
220 results
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Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
single cell RNA-seq
tissue
liver
166
20
2
1
1
right lobe of liver
3
1
2
2
cell line
HepG2
14
1
primary cell
hepatocyte
5
1
hepatic stellate cell
1
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