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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
83
snATAC-seq
16
DNase-seq
Assay category
503
Transcription
471
DNA binding
99
DNA accessibility
7
3D chromatin structure
3
DNA methylation
1
DNA sequencing
Date released
27
February, 2021
21
May, 2022
16
January, 2021
13
June, 2019
10
April, 2020
6
August, 2021
2
February, 2023
2
October, 2019
1
August, 2017
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
13
bam
13
bed bed3+
13
bed broadPeak
13
bed narrowPeak
13
bigBed broadPeak
13
bigBed narrowPeak
13
bigWig
Organism
98
Homo sapiens
Biosample type
65
primary cell
34
tissue
Organ
15
kidney
13
pancreas
brain
10
lung
8
blood
8
bodily fluid
8
epithelium
3
heart
1
blood vessel
1
connective tissue
1
liver
1
vasculature
Project
48
HPAP
23
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
175
GRCh38
hg19
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
17
AMP-T2D consortium
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
28
audit script error
assay_title!
ATAC-seq
WGBS
assembly!
hg19
organ_slims!
brain
BIOSAMPLE
ASSAY
99 results
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snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 2 more…
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
body of pancreas
2
+ See 4 more…
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