Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
84
snATAC-seq
5
DNase-seq
5
FAIRE-seq
Assay category
597
DNA binding
514
Transcription
94
DNA accessibility
80
DNA methylation
32
3D chromatin structure
1
DNA sequencing
Date released
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
6
August, 2021
4
August, 2017
3
October, 2019
2
February, 2023
2
July, 2019
1
August, 2022
1
November, 2018
Available data
30
fastq
21
zippedFastqFolder
7
bam
7
bed narrowPeak
7
bigBed narrowPeak
7
bigWig
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tar
1
txt
Organism
93
Homo sapiens
Biosample type
61
primary cell
33
tissue
Organ
13
pancreas
10
lung
9
kidney
8
blood
8
bodily fluid
3
epithelium
1
blood vessel
1
brain
1
liver
1
musculature of body
1
vasculature
1
vein
Project
48
HPAP
18
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
28
hg19
GRCh38
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
12
AMP-T2D consortium
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
assay_title!
ATAC-seq
assembly!
GRCh38
month_released!
June, 2019
May, 2023
BIOSAMPLE
ASSAY
94 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
skeletal muscle myoblast
2
endothelial cell of umbilical vein
1
kidney glomerular epithelial cell
1
+ See 1 more…
tissue
lung
10
islet of Langerhans
7
1
kidney
6
1
pancreas
4
1
frontal cortex
1
+ See 2 more…
See all biosamples
Download