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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
25
DNase-seq
1
FAIRE-seq
Assay category
776
DNA binding
485
Transcription
26
DNA accessibility
12
3D chromatin structure
10
DNA methylation
Date released
17
June, 2019
5
October, 2019
3
August, 2017
1
November, 2020
Available data
26
bam
26
bed narrowPeak
26
bigBed narrowPeak
26
bigWig
23
bed broadPeak
23
bigBed broadPeak
21
bed bed3+
2
fastq
1
tar
Organism
26
Homo sapiens
Biosample type
tissue
23
primary cell
2
cell line
1
in vitro differentiated cells
Organ
12
epithelium
6
connective tissue
6
vasculature
5
brain
5
kidney
4
blood vessel
3
vein
2
heart
2
liver
1
eye
1
musculature of body
1
pancreas
Project
26
AMP
Genome assembly (visualization)
30
GRCh38
26
hg19
Lab
26
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
ATAC-seq
audit.ERROR.category!
audit script error
biosample_type!
tissue
BIOSAMPLE
ASSAY
26 results
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DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
2
1
cardiac fibroblast
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 14 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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