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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
84
snATAC-seq
6
DNase-seq
5
FAIRE-seq
Assay category
1914
Transcription
1757
DNA binding
97
DNA methylation
95
DNA accessibility
33
3D chromatin structure
1
DNA sequencing
Date released
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
6
August, 2021
4
August, 2017
4
October, 2019
2
February, 2023
2
July, 2019
1
August, 2022
1
November, 2018
Available data
214
bam
214
bed narrowPeak
214
bigBed narrowPeak
214
bigWig
bed broadPeak
206
bigBed broadPeak
205
bed bed3+
41
fastq
21
zippedFastqFolder
1
tar
1
txt
Organism
94
Homo sapiens
Biosample type
60
primary cell
34
tissue
1
cell line
Organ
14
pancreas
10
kidney
10
lung
8
blood
8
bodily fluid
4
epithelium
1
blood vessel
1
brain
1
liver
1
musculature of body
1
vasculature
1
vein
Project
48
HPAP
19
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
9
hg19
2
GRCh38
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
13
AMP-T2D consortium
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
assay_title!
ATAC-seq
files.file_type!
bed broadPeak
month_released!
March, 2023
organ_slims!
skin of body
BIOSAMPLE
ASSAY
95 results
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Clear Filters
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
+ See 1 more…
tissue
lung
10
islet of Langerhans
7
1
1
kidney
6
1
pancreas
4
1
frontal cortex
1
+ See 2 more…
cell line
glomerular visceral epithelial cell
1
See all biosamples
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