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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
84
snATAC-seq
3
DNase-seq
Assay category
1903
Transcription
1067
DNA binding
97
DNA methylation
87
DNA accessibility
24
3D chromatin structure
1
DNA sequencing
Date released
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
2
October, 2019
1
August, 2017
1
August, 2022
Available data
214
bam
214
bed narrowPeak
bigBed narrowPeak
214
bigWig
206
bed broadPeak
206
bigBed broadPeak
205
bed bed3+
41
fastq
21
zippedFastqFolder
1
tar
1
txt
Organism
86
Homo sapiens
Biosample type
58
primary cell
29
tissue
Organ
11
pancreas
10
lung
8
blood
8
bodily fluid
8
kidney
2
epithelium
1
liver
1
musculature of body
Project
48
HPAP
18
T1D
11
AMP
10
LungMap
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
5
AMP-T2D consortium
Audit category:
29
audit script error
assay_title!
ATAC-seq
files.file_type!
bigBed narrowPeak
lab.title!
Stephen Parker, UMich
month_released!
March, 2020
BIOSAMPLE
ASSAY
87 results
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snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
right lobe of liver
1
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