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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
76
snATAC-seq
15
DNase-seq
4
FAIRE-seq
Assay category
1888
Transcription
1538
DNA binding
97
DNA methylation
95
DNA accessibility
29
3D chromatin structure
1
DNA sequencing
Date released
June, 2019
27
February, 2021
22
May, 2022
October, 2019
10
April, 2020
10
November, 2018
8
January, 2021
6
August, 2017
6
August, 2021
2
February, 2023
2
July, 2019
1
August, 2022
1
November, 2020
Available data
41
fastq
21
zippedFastqFolder
18
bam
18
bed narrowPeak
18
bigBed narrowPeak
18
bigWig
12
bed broadPeak
12
bigBed broadPeak
11
bed bed3+
1
txt
Organism
94
Homo sapiens
Biosample type
51
primary cell
43
tissue
1
in vitro differentiated cells
Organ
16
pancreas
10
lung
8
blood
bodily fluid
7
kidney
4
liver
3
brain
3
connective tissue
1
adipose tissue
1
musculature of body
1
spleen
Project
48
HPAP
27
AMP
10
LungMap
10
T1D
Genome assembly (visualization)
19
hg19
12
GRCh38
Lab
48
Klaus Kaestner, Upenn
21
AMP-T2D consortium
10
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
assay_title!
ATAC-seq
month_released!
June, 2019
October, 2019
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
95 results
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snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
skeletal muscle myoblast
2
osteoblast
1
tissue
lung
10
islet of Langerhans
7
1
1
kidney
6
1
pancreas
4
1
body of pancreas
2
+ See 7 more…
in vitro differentiated cells
adipocyte
1
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