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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
8
DNase-seq
8
snATAC-seq
Assay category
481
Transcription
198
DNA binding
16
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Date released
8
January, 2021
6
June, 2019
1
August, 2017
November, 2018
1
November, 2020
Available data
8
bam
8
bed broadPeak
8
bed narrowPeak
8
bigBed broadPeak
8
bigBed narrowPeak
8
bigWig
7
bed bed3+
1
fastq
Organism
16
Homo sapiens
Biosample type
14
primary cell
1
in vitro differentiated cells
1
tissue
Organ
88
kidney
36
limb
34
musculature of body
31
brain
30
heart
20
epithelium
18
pancreas
18
ureter
12
vasculature
10
blood vessel
10
lung
8
blood
8
bodily fluid
8
connective tissue
4
artery
4
eye
3
liver
3
vein
2
nerve
1
adipose tissue
Project
8
AMP
8
T1D
Genome assembly (visualization)
8
GRCh38
7
hg19
Lab
8
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
month_released!
November, 2018
BIOSAMPLE
ASSAY
16 results
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DNase-seq
snATAC-seq
primary cell
peripheral blood mononuclear cell
8
cardiac fibroblast
3
brain pericyte
1
hepatic stellate cell
1
osteoblast
1
in vitro differentiated cells
adipocyte
1
tissue
omental fat pad
1
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