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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ATAC-seq
  • 212DNase-seq
  • 84snATAC-seq
  • 5FAIRE-seq
Assay category
  • 1918Transcription
  • 1871DNA binding
  • 301DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Date released
  • 187June, 2019
  • 27February, 2021
  • 22May, 2022
  • 16January, 2021
  • 11October, 2019
  • 10April, 2020
  • 10November, 2018
  • 6August, 2017
  • 6August, 2021
  • 2February, 2023
  • 2July, 2019
  • 1August, 2022
  • 1November, 2020
Available data
  • 214bam
  • 214bed narrowPeak
  • 214bigBed narrowPeak
  • 214bigWig
  • 206bed broadPeak
  • 206bigBed broadPeak
  • 205bed bed3+
  • 41fastq
  • 21zippedFastqFolder
  • 1tar
  • 1txt
Organism
  • 300Homo sapiens
Biosample type
  • 210tissue
  • 88primary cell
  • 2cell line
  • 1in vitro differentiated cells
Organ
  • 88kidney
  • 36limb
  • 34musculature of body
  • 33brain
  • 30heart
  • 21pancreas
  • 20epithelium
  • 18ureter
  • 12vasculature
  • 10blood vessel
  • 10lung
  • 9connective tissue
  • 8blood
  • 8bodily fluid
  • 6liver
  • 4artery
  • 4eye
  • 3vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 225AMP
  • 48HPAP
  • 18T1D
  • 10LungMap
Genome assembly (visualization)
  • 207GRCh38
  • 192hg19
Lab
  • 219AMP-T2D consortium
  • 48Klaus Kaestner, Upenn
  • 18Kyle Gaulton, UCSD
  • 10Xin Sun, UCSD
  • 6Katalin Susztak, Upenn
Audit category:
  • 29audit script error
  • 4inconsistent ontology term
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

301 results

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Clear Filters
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney1361
heart18
muscle of arm17
brain14
muscle of leg13
primary cell
Langerhans cell48
peripheral blood mononuclear cell8
cardiac fibroblast3
endothelial cell of umbilical vein21
kidney tubule cell3
cell line
Panc11
glomerular visceral epithelial cell1
in vitro differentiated cells
adipocyte1
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