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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
DNase-seq
188
ATAC-seq
5
FAIRE-seq
1
snATAC-seq
Assay category
1578
DNA binding
1472
Transcription
403
DNA accessibility
18
DNA methylation
Date released
187
June, 2019
45
May, 2020
26
November, 2019
19
May, 2022
18
February, 2021
15
October, 2019
14
September, 2018
13
February, 2023
13
May, 2021
10
August, 2017
10
August, 2021
10
November, 2018
8
July, 2019
7
October, 2017
5
September, 2017
2
November, 2020
1
March, 2019
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
403
Homo sapiens
Biosample type
251
tissue
114
primary cell
26
in vitro differentiated cells
12
cell line
Organ
80
kidney
75
pancreas
44
limb
42
epithelium
42
heart
36
brain
34
musculature of body
23
vasculature
21
blood vessel
19
connective tissue
18
ureter
14
artery
12
bone element
12
skeleton
8
liver
5
adipose tissue
4
eye
3
nerve
3
vein
2
spleen
Project
403
AMP
Genome assembly (visualization)
377
hg19
318
GRCh38
Lab
381
AMP-T2D consortium
18
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
1
Mark McCarthy, Oxford
Audit category:
20
inconsistent ontology term
1
audit script error
1
inconsistent replicate
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
403 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
snATAC-seq
tissue
islet of Langerhans
1
38
1
heart
18
muscle of arm
17
brain
14
1
kidney
13
1
+ See 57 more…
primary cell
monocyte
15
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 49 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
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