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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
28
snATAC-seq
12
DNase-seq
2
FAIRE-seq
Assay category
857
DNA binding
437
Transcription
118
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Date released
29
February, 2021
19
May, 2022
14
September, 2018
13
February, 2023
10
November, 2018
9
August, 2017
8
October, 2017
7
August, 2020
5
September, 2017
3
September, 2020
1
March, 2019
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
118
Homo sapiens
Biosample type
61
primary cell
47
tissue
9
in vitro differentiated cells
1
cell line
Organ
61
pancreas
32
epithelium
10
connective tissue
5
liver
4
bone element
4
brain
4
skeleton
3
adipose tissue
2
spleen
1
musculature of body
Project
81
AMP
37
HPAP
Genome assembly (visualization)
79
hg19
55
GRCh38
Lab
58
AMP-T2D consortium
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
audit script error
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
118 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
27
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 2 more…
tissue
islet of Langerhans
20
1
1
body of pancreas
4
2
brain
1
2
liver
2
omental fat pad
1
1
+ See 10 more…
in vitro differentiated cells
chondrocyte
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
See all biosamples
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