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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
529
ATAC-seq
DNase-seq
76
snATAC-seq
5
FAIRE-seq
Assay category
1918
Transcription
610
DNA accessibility
97
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
26
November, 2019
22
October, 2019
14
September, 2018
11
May, 2023
10
April, 2020
8
January, 2021
8
July, 2019
8
October, 2017
7
August, 2020
6
August, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
September, 2020
2
January, 2018
1
August, 2022
1
November, 2018
1
November, 2020
Available data
283
bed narrowPeak
180
bam
140
bigWig
90
fastq
64
xls
60
zippedFastqFolder
32
bigBed narrowPeak
14
tsv
12
bed bed3
7
bed bedgraph
5
bed bed3+
4
txt
2
bed broadPeak
1
tar
Organism
609
Homo sapiens
Biosample type
291
tissue
249
primary cell
42
in vitro differentiated cells
28
cell line
Organ
165
pancreas
104
epithelium
82
kidney
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
10
lung
blood
9
bodily fluid
8
limb
6
adipose tissue
5
brain
2
musculature of body
1
nerve
pituitary gland
1
skin of body
1
spleen
1
vein
Project
482
AMP
97
HPAP
21
T1D
10
LungMap
Genome assembly (visualization)
266
hg19
234
GRCh38
Lab
348
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
44
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
42
inconsistent ontology term
29
audit script error
1
inconsistent replicate
assay_title!
ChIP-seq
DNase-seq
organ_slims!
blood
pituitary gland
BIOSAMPLE
ASSAY
610 results
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Clear Filters
ATAC-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
6
1
islet of Langerhans
67
7
1
coronary artery
36
liver
20
retina
15
+ See 32 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 36 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
HepG2
1
See all biosamples
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