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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
259
ATAC-seq
178
DNase-seq
28
snATAC-seq
4
FAIRE-seq
Assay category
1227
Transcription
469
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Date released
163
June, 2019
81
February, 2023
70
August, 2021
39
May, 2022
20
November, 2019
19
October, 2019
11
May, 2023
10
April, 2020
10
November, 2018
8
February, 2021
8
January, 2021
8
July, 2019
8
October, 2017
5
August, 2017
4
March, 2019
2
January, 2018
2
March, 2020
1
August, 2022
Available data
389
bed narrowPeak
245
bam
224
bigWig
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
64
xls
41
fastq
5
bed bed3
1
tsv
1
txt
Organism
468
Homo sapiens
Biosample type
469
tissue
288
primary cell
43
in vitro differentiated cells
31
cell line
Organ
150
kidney
82
pancreas
66
heart
44
limb
43
blood vessel
43
vasculature
41
artery
34
musculature of body
32
brain
31
eye
25
liver
18
ureter
12
bone element
12
epithelium
12
skeleton
10
lung
8
adipose tissue
8
connective tissue
3
nerve
2
spleen
1
pituitary gland
skin of body
Project
438
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
335
GRCh38
288
hg19
Lab
314
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
2
inconsistent ontology term
assay_title!
ChIP-seq
organ_slims!
skin of body
BIOSAMPLE
ASSAY
469 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
67
1
7
1
coronary artery
36
2
liver
20
2
heart
18
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