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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
DNase-seq
1
FAIRE-seq
Assay category
201
Transcription
103
DNA binding
101
DNA accessibility
8
3D chromatin structure
6
DNA methylation
Date released
39
May, 2022
16
May, 2021
14
September, 2018
12
February, 2023
7
August, 2020
5
September, 2017
August, 2017
3
September, 2020
2
March, 2020
2
October, 2019
1
November, 2019
Available data
39
zippedFastqFolder
34
bed narrowPeak
32
bigWig
29
fastq
22
bam
20
bigBed narrowPeak
1
tar
1
tsv
Organism
101
Homo sapiens
Biosample type
70
primary cell
19
cell line
12
tissue
Organ
161
pancreas
101
epithelium
82
kidney
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
24
connective tissue
22
liver
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
limb
5
adipose tissue
5
brain
2
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Project
52
AMP
49
HPAP
Genome assembly (visualization)
36
hg19
31
GRCh38
Lab
52
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
assay_title!
DNase-seq
WGBS
month_released!
August, 2017
BIOSAMPLE
ASSAY
101 results
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ATAC-seq
FAIRE-seq
primary cell
pancreatic alpha cell
34
pancreatic beta cell
22
pancreatic acinar cell
8
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
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cell line
EndoC_BH1
19
tissue
pigmented layer of retina
12
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