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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
DNase-seq
1
FAIRE-seq
Assay category
201
Transcription
108
DNA binding
104
DNA accessibility
53
DNA methylation
8
3D chromatin structure
Date released
39
May, 2022
16
May, 2021
14
September, 2018
12
February, 2023
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
2
March, 2020
2
October, 2019
1
November, 2019
Available data
39
zippedFastqFolder
37
bed narrowPeak
35
bigWig
32
fastq
25
bam
23
bigBed narrowPeak
1
tar
1
tsv
Organism
104
Homo sapiens
Biosample type
73
primary cell
19
cell line
12
tissue
Organ
165
pancreas
104
epithelium
82
kidney
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
limb
6
adipose tissue
5
brain
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Project
55
AMP
49
HPAP
Genome assembly (visualization)
39
hg19
34
GRCh38
Lab
55
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
assay_title!
DNase-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
104 results
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ATAC-seq
FAIRE-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
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cell line
EndoC_BH1
19
tissue
pigmented layer of retina
12
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