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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ATAC-seq
11
snATAC-seq
DNase-seq
2
FAIRE-seq
Assay category
479
Transcription
218
DNA binding
165
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
13
February, 2023
8
January, 2021
7
August, 2020
5
October, 2017
5
September, 2017
4
August, 2017
4
March, 2019
4
March, 2020
3
October, 2019
3
September, 2020
1
August, 2022
1
November, 2018
Available data
67
bam
66
bed narrowPeak
58
fastq
43
bigWig
39
zippedFastqFolder
24
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
165
Homo sapiens
Biosample type
75
tissue
71
primary cell
19
cell line
Organ
165
pancreas
104
epithelium
kidney
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
limb
6
adipose tissue
5
brain
2
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Project
95
AMP
49
HPAP
21
T1D
Genome assembly (visualization)
73
hg19
59
GRCh38
Lab
72
AMP-T2D consortium
49
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
1
audit script error
assay_title!
DNase-seq
organ_slims!
kidney
BIOSAMPLE
ASSAY
165 results
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ATAC-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
58
7
1
pancreas
4
1
body of pancreas
4
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
cell line
EndoC_BH1
19
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