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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
ATAC-seq
56
snATAC-seq
32
DNase-seq
FAIRE-seq
Assay category
574
Transcription
477
DNA binding
330
DNA accessibility
58
DNA methylation
Date released
100
May, 2020
60
May, 2022
32
February, 2021
24
February, 2023
24
June, 2019
18
May, 2021
14
September, 2018
12
August, 2021
10
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
5
November, 2019
5
September, 2017
3
September, 2020
2
November, 2020
Available data
131
bam
120
bigWig
90
bed narrowPeak
61
fastq
60
zippedFastqFolder
54
bigBed narrowPeak
31
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
12
tsv
7
bed bedgraph
6
bed bed3
3
txt
Organism
330
Homo sapiens
Biosample type
466
tissue
287
primary cell
43
in vitro differentiated cells
31
cell line
Organ
90
epithelium
71
pancreas
26
connective tissue
12
kidney
8
blood
8
bodily fluid
6
vasculature
5
brain
4
blood vessel
3
heart
3
liver
2
vein
1
eye
1
musculature of body
Project
225
AMP
97
HPAP
8
T1D
Genome assembly (visualization)
149
hg19
94
GRCh38
Lab
215
AMP-T2D consortium
97
Klaus Kaestner, Upenn
13
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
27
audit script error
25
inconsistent ontology term
assay_title!
FAIRE-seq
Hi-C
BIOSAMPLE
ASSAY
330 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
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