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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
DNase-seq
175
ATAC-seq
FAIRE-seq
Assay category
1578
DNA binding
1406
Transcription
384
DNA accessibility
18
DNA methylation
Date released
187
June, 2019
45
May, 2020
26
November, 2019
18
February, 2021
18
May, 2022
14
October, 2019
14
September, 2018
13
May, 2021
10
August, 2021
9
August, 2017
9
November, 2018
7
October, 2017
6
July, 2019
5
September, 2017
2
November, 2020
1
March, 2019
Available data
487
bed narrowPeak
384
bam
345
bigWig
236
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
100
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
Organism
384
Homo sapiens
Biosample type
241
tissue
113
primary cell
18
in vitro differentiated cells
12
cell line
Organ
79
kidney
73
pancreas
44
limb
42
heart
41
epithelium
34
brain
33
musculature of body
22
vasculature
20
blood vessel
18
ureter
14
artery
14
connective tissue
8
bone element
8
liver
8
skeleton
5
adipose tissue
4
eye
3
nerve
2
spleen
2
vein
Project
384
AMP
Genome assembly (visualization)
358
hg19
318
GRCh38
Lab
365
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
19
inconsistent ontology term
1
inconsistent replicate
assay_title!
FAIRE-seq
HiChIP
BIOSAMPLE
ASSAY
384 results
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Clear Filters
DNase-seq
ATAC-seq
tissue
islet of Langerhans
1
38
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 52 more…
primary cell
monocyte
15
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 49 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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