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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ATAC-seq
28
snATAC-seq
1
DNase-seq
Assay category
267
DNA accessibility
256
DNA binding
184
Transcription
24
3D chromatin structure
21
DNA methylation
1
DNA sequencing
Date released
93
February, 2023
72
August, 2021
21
May, 2021
21
May, 2022
16
October, 2019
11
May, 2023
10
April, 2020
8
January, 2021
4
February, 2021
3
January, 2018
3
March, 2019
2
March, 2020
1
August, 2017
1
August, 2022
1
October, 2017
Available data
423
bed narrowPeak
bam
242
bigWig
189
bigBed narrowPeak
182
bed bed3+
180
bed broadPeak
178
bigBed broadPeak
64
xls
42
fastq
11
bed bed3
7
bed bedgraph
4
txt
tsv
Organism
266
Homo sapiens
Biosample type
224
tissue
primary cell
25
in vitro differentiated cells
18
cell line
Organ
81
kidney
47
pancreas
35
artery
35
blood vessel
35
heart
35
vasculature
29
epithelium
28
eye
21
liver
20
connective tissue
10
lung
4
bone element
4
skeleton
3
adipose tissue
2
brain
2
musculature of body
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
236
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
113
GRCh38
88
hg19
Lab
121
AMP-T2D consortium
81
Katalin Susztak, Upenn
26
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
20
inconsistent ontology term
2
audit script error
assay_title!
GRO-seq
biosample_type!
primary cell
files.file_type!
bam
tsv
BIOSAMPLE
ASSAY
267 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney
75
6
islet of Langerhans
29
7
coronary artery
35
liver
20
retina
15
+ See 11 more…
in vitro differentiated cells
adipocyte
8
embryonic stem cell
6
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 3 more…
cell line
EndoC_BH1
17
GM12878
1
See all biosamples
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