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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
DNase-seq
75
ATAC-seq
6
snATAC-seq
1
FAIRE-seq
Assay category
163
DNA accessibility
125
Transcription
52
DNA binding
4
DNA methylation
Date released
78
June, 2019
70
August, 2021
11
May, 2023
3
October, 2019
1
July, 2019
Available data
144
bed narrowPeak
80
bam
80
bigBed narrowPeak
80
bigWig
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
Organism
163
Homo sapiens
Biosample type
150
tissue
12
primary cell
1
cell line
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
163
AMP
Genome assembly (visualization)
154
GRCh38
73
hg19
Lab
82
AMP-T2D consortium
81
Katalin Susztak, Upenn
Audit category:
1
inconsistent ontology term
assay_title!
Hi-C
HiChIP
BIOSAMPLE
ASSAY
163 results
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DNase-seq
ATAC-seq
snATAC-seq
FAIRE-seq
tissue
kidney
13
75
6
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 4 more…
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
+ See 3 more…
cell line
glomerular visceral epithelial cell
1
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