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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
291
ATAC-seq
209
DNase-seq
27
snATAC-seq
5
FAIRE-seq
Assay category
1544
DNA binding
532
DNA accessibility
371
Transcription
21
DNA methylation
1
3D chromatin structure
Date released
187
June, 2019
76
August, 2021
65
February, 2023
45
February, 2021
38
May, 2022
26
November, 2019
15
October, 2019
14
September, 2018
13
May, 2021
10
August, 2017
10
November, 2018
8
October, 2017
7
August, 2020
7
July, 2019
5
September, 2017
3
September, 2020
2
November, 2020
1
March, 2019
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
532
Homo sapiens
Biosample type
392
tissue
106
primary cell
22
in vitro differentiated cells
12
cell line
Organ
144
kidney
86
pancreas
77
heart
64
epithelium
58
vasculature
56
blood vessel
49
artery
44
limb
34
brain
33
musculature of body
31
eye
28
liver
18
ureter
17
connective tissue
8
bone element
8
skeleton
6
adipose tissue
3
nerve
3
vein
2
spleen
Project
495
AMP
37
HPAP
Genome assembly (visualization)
427
GRCh38
371
hg19
Lab
387
AMP-T2D consortium
64
Katalin Susztak, Upenn
37
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
16
inconsistent ontology term
1
inconsistent replicate
assay_title!
MPRA
BIOSAMPLE
ASSAY
532 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
64
13
1
islet of Langerhans
39
1
1
coronary artery
36
2
liver
20
2
heart
18
+ See 53 more…
primary cell
Langerhans cell
27
monocyte
13
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
+ See 26 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
1
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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