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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
456
ATAC-seq
177
DNase-seq
84
snATAC-seq
4
FAIRE-seq
Assay category
1641
Transcription
971
DNA binding
721
DNA accessibility
23
3D chromatin structure
20
DNA methylation
Date released
157
June, 2019
100
May, 2020
99
May, 2022
92
February, 2023
70
August, 2021
36
February, 2021
26
October, 2019
20
November, 2019
16
January, 2021
14
September, 2018
13
May, 2021
11
May, 2023
10
April, 2020
10
August, 2017
8
November, 2018
7
August, 2020
7
October, 2017
6
July, 2019
5
September, 2017
4
March, 2019
3
September, 2020
2
January, 2018
2
March, 2020
2
November, 2020
1
August, 2022
Available data
425
bed narrowPeak
324
bam
297
bigWig
203
bigBed narrowPeak
174
bed broadPeak
172
bed bed3+
172
bigBed broadPeak
98
fastq
64
xls
60
zippedFastqFolder
13
tsv
5
bed bed3
1
tar
1
txt
Organism
720
Homo sapiens
Biosample type
438
tissue
283
primary cell
in vitro differentiated cells
cell line
Organ
162
kidney
153
pancreas
103
epithelium
69
heart
50
vasculature
48
blood vessel
44
limb
41
artery
brain
35
musculature of body
32
eye
28
liver
18
ureter
16
connective tissue
12
bone element
12
skeleton
10
lung
8
adipose tissue
8
blood
8
bodily fluid
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
585
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
377
GRCh38
371
hg19
Lab
461
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
47
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
29
audit script error
17
inconsistent ontology term
assay_title!
WGBS
biosample_type!
cell line
in vitro differentiated cells
organ_slims!
brain
BIOSAMPLE
ASSAY
721 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
67
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 46 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 53 more…
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