Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ATAC-seq
27
snATAC-seq
12
DNase-seq
2
FAIRE-seq
Assay category
1678
Transcription
857
DNA binding
115
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Date released
27
February, 2021
18
May, 2022
14
September, 2018
12
February, 2023
10
November, 2018
9
August, 2017
7
August, 2020
7
October, 2017
5
September, 2017
3
September, 2020
2
March, 2020
1
March, 2019
Available data
492
bed narrowPeak
389
bam
349
bigWig
241
bigBed narrowPeak
209
bed bed3+
207
bed broadPeak
206
bigBed broadPeak
101
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
115
Homo sapiens
Biosample type
72
primary cell
41
tissue
1
cell line
1
in vitro differentiated cells
Organ
62
pancreas
33
epithelium
4
connective tissue
4
liver
3
adipose tissue
3
brain
2
spleen
Project
78
AMP
37
HPAP
Genome assembly (visualization)
64
hg19
52
GRCh38
Lab
59
AMP-T2D consortium
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Stephen Parker, UMich
Audit category:
27
audit script error
7
inconsistent ontology term
assay_title!
WGBS
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
115 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
27
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 5 more…
tissue
islet of Langerhans
20
1
1
body of pancreas
4
2
brain
2
liver
2
omental fat pad
1
1
+ See 5 more…
cell line
EndoC_BH1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download