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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ATAC-seq
66
snATAC-seq
Assay category
292
Transcription
154
DNA binding
149
DNA accessibility
3
3D chromatin structure
Date released
78
May, 2022
27
February, 2021
16
January, 2021
13
February, 2023
7
August, 2020
5
May, 2021
3
September, 2020
Available data
60
zippedFastqFolder
55
fastq
18
bam
18
bed narrowPeak
15
bigWig
Organism
149
Homo sapiens
Biosample type
105
primary cell
39
tissue
5
in vitro differentiated cells
Organ
88
pancreas
49
epithelium
8
blood
8
bodily fluid
Project
97
HPAP
29
T1D
23
AMP
Genome assembly (visualization)
23
hg19
10
GRCh38
Lab
562
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
Stephen Parker, UMich
Audit category:
27
audit script error
assay_title!
WGBS
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
149 results
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ATAC-seq
snATAC-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
29
pancreatic beta cell
16
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
tissue
islet of Langerhans
29
6
pancreas
4
in vitro differentiated cells
embryonic stem cell
5
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