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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
375
ATAC-seq
172
DNase-seq
73
snATAC-seq
2
FAIRE-seq
Assay category
1435
DNA binding
1415
Transcription
622
DNA accessibility
22
3D chromatin structure
18
DNA methylation
1
DNA sequencing
Date released
153
June, 2019
100
May, 2020
91
February, 2023
82
August, 2021
49
February, 2021
42
May, 2022
28
October, 2019
18
May, 2021
11
May, 2023
10
April, 2020
8
January, 2021
6
August, 2017
6
July, 2019
6
November, 2019
5
November, 2018
3
January, 2018
2
November, 2020
2
October, 2017
Available data
385
bed narrowPeak
279
bam
264
bigWig
176
bigBed narrowPeak
170
bed bed3+
167
bed broadPeak
167
bigBed broadPeak
64
xls
38
fastq
21
zippedFastqFolder
12
tsv
11
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
621
Homo sapiens
Biosample type
356
tissue
212
primary cell
43
in vitro differentiated cells
11
cell line
Organ
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
556
AMP
48
HPAP
10
LungMap
8
T1D
Genome assembly (visualization)
350
hg19
340
GRCh38
Lab
445
AMP-T2D consortium
81
Katalin Susztak, Upenn
48
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
28
audit script error
27
inconsistent ontology term
1
inconsistent replicate
assay_title!
WGBS
organ_slims!
brain
pancreas
BIOSAMPLE
ASSAY
622 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
coronary artery
36
2
liver
20
2
heart
18
retina
15
3
+ See 44 more…
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
+ See 49 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
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