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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ATAC-seq
27
snATAC-seq
10
DNase-seq
2
FAIRE-seq
Assay category
839
DNA binding
371
Transcription
98
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Date released
27
February, 2021
18
May, 2022
14
September, 2018
9
August, 2017
8
November, 2018
7
August, 2020
7
October, 2017
5
September, 2017
3
September, 2020
Available data
459
bed narrowPeak
353
bam
315
bigWig
208
bigBed narrowPeak
177
bed bed3+
175
bed broadPeak
174
bigBed broadPeak
98
fastq
64
xls
60
zippedFastqFolder
14
tsv
11
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
98
Homo sapiens
Biosample type
60
primary cell
37
tissue
1
in vitro differentiated cells
Organ
60
pancreas
32
epithelium
4
connective tissue
4
liver
3
adipose tissue
brain
2
spleen
Project
61
AMP
37
HPAP
Genome assembly (visualization)
61
hg19
50
GRCh38
Lab
42
AMP-T2D consortium
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
assay_title!
small RNA-seq
lab.title!
Mark McCarthy, Oxford
organ_slims!
brain
BIOSAMPLE
ASSAY
98 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
27
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 1 more…
tissue
islet of Langerhans
19
1
1
body of pancreas
4
2
liver
2
omental fat pad
1
1
right lobe of liver
1
1
+ See 3 more…
in vitro differentiated cells
adipocyte
1
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