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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
222
ATAC-seq
173
DNase-seq
18
snATAC-seq
4
FAIRE-seq
Assay category
834
DNA binding
417
DNA accessibility
181
Transcription
36
DNA methylation
15
3D chromatin structure
Date released
160
June, 2019
70
August, 2021
46
February, 2023
39
May, 2022
20
November, 2019
17
October, 2019
11
May, 2023
10
November, 2018
8
February, 2021
8
January, 2021
8
October, 2017
6
July, 2019
5
August, 2017
4
March, 2019
2
January, 2018
2
March, 2020
1
August, 2022
Available data
346
bed narrowPeak
237
bam
216
bigWig
179
bigBed narrowPeak
173
bed broadPeak
172
bed bed3+
171
bigBed broadPeak
64
xls
41
fastq
5
bed bed3
1
tsv
1
txt
Organism
417
Homo sapiens
Biosample type
417
tissue
281
primary cell
43
in vitro differentiated cells
23
cell line
Organ
150
kidney
82
pancreas
66
heart
44
limb
43
blood vessel
vasculature
41
artery
34
musculature of body
32
brain
31
eye
25
liver
18
ureter
12
bone element
12
epithelium
12
skeleton
8
adipose tissue
8
connective tissue
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
396
AMP
21
T1D
LungMap
Genome assembly (visualization)
292
GRCh38
280
hg19
Lab
272
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
audit script error
2
inconsistent ontology term
assay_title!
total RNA-seq
award.project!
LungMap
organ_slims!
vasculature
BIOSAMPLE
ASSAY
417 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
liver
20
2
heart
18
retina
15
3
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