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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
272
ATAC-seq
84
snATAC-seq
5
DNase-seq
5
FAIRE-seq
Assay category
525
DNA binding
505
Transcription
366
DNA accessibility
80
DNA methylation
28
3D chromatin structure
1
DNA sequencing
Date released
100
May, 2020
99
May, 2022
58
February, 2023
27
February, 2021
17
October, 2019
16
January, 2021
16
May, 2021
10
April, 2020
6
August, 2021
4
August, 2017
4
March, 2020
3
January, 2018
2
July, 2019
2
March, 2019
1
August, 2022
1
November, 2018
Available data
80
bigWig
73
bed narrowPeak
71
bam
60
zippedFastqFolder
49
fastq
14
tsv
8
bigBed narrowPeak
5
bed bed3
2
bed broadPeak
1
bed bed3+
1
bigBed broadPeak
1
tar
1
txt
Organism
365
Homo sapiens
Biosample type
212
primary cell
135
tissue
in vitro differentiated cells
19
cell line
Organ
106
pancreas
72
epithelium
28
eye
21
liver
10
lung
9
blood
9
bodily fluid
9
kidney
4
bone element
4
skeleton
3
adipose tissue
3
brain
3
connective tissue
2
musculature of body
1
blood vessel
1
pituitary gland
1
skin of body
1
vasculature
1
vein
Project
240
AMP
87
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
GRCh38
410
hg19
Lab
194
AMP-T2D consortium
87
Klaus Kaestner, Upenn
47
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
29
audit script error
28
inconsistent ontology term
assembly!
GRCh38
biosample_type!
in vitro differentiated cells
month_released!
December, 2019
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
366 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
pancreatic beta cell
13
+ See 36 more…
tissue
islet of Langerhans
46
7
1
liver
20
retina
15
pigmented layer of retina
12
lung
10
+ See 11 more…
cell line
EndoC_BH1
18
GM12878
1
See all biosamples
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