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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ATAC-seq
56
snATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
231
DNA accessibility
210
DNA binding
195
Transcription
58
DNA methylation
12
3D chromatin structure
1
DNA sequencing
Date released
100
May, 2020
60
May, 2022
27
February, 2021
16
May, 2021
12
February, 2023
8
January, 2021
3
October, 2019
2
August, 2017
2
March, 2020
1
January, 2018
Available data
60
zippedFastqFolder
51
bigWig
48
bam
28
fastq
13
tsv
3
bed narrowPeak
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
1
tar
Organism
231
Homo sapiens
Biosample type
212
primary cell
135
tissue
25
in vitro differentiated cells
19
cell line
Organ
60
epithelium
57
pancreas
9
blood
9
bodily fluid
2
kidney
1
blood vessel
1
vasculature
1
vein
Project
136
AMP
87
HPAP
8
T1D
Genome assembly (visualization)
122
hg19
GRCh38
Lab
136
AMP-T2D consortium
87
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent ontology term
27
audit script error
assembly!
GRCh38
month_released!
June, 2018
BIOSAMPLE
ASSAY
231 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
pancreatic beta cell
13
+ See 36 more…
cell line
EndoC_BH1
18
GM12878
1
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