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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 297ATAC-seq
  • 84snATAC-seq
  • 5DNase-seq
  • 5FAIRE-seq
Assay category
  • 605DNA binding
  • 517Transcription
  • 391DNA accessibility
  • 80DNA methylation
  • 323D chromatin structure
  • 1DNA sequencing
Date released
  • 100May, 2020
  • 99May, 2022
  • 70February, 2023
  • 31February, 2021
  • 21May, 2021
  • 19October, 2019
  • 16January, 2021
  • 10April, 2020
  • 8August, 2021
  • 4August, 2017
  • 4March, 2020
  • 3January, 2018
  • 2July, 2019
  • 2March, 2019
  • 1August, 2022
  • 1November, 2018
Available data
  • 92bigWig
  • 77bed narrowPeak
  • 71bam
  • 60zippedFastqFolder
  • 49fastq
  • 14tsv
  • 10bed bed3
  • 10bigBed narrowPeak
  • 7bed bedgraph
  • 5bed bed3+
  • 4txt
  • 2bed broadPeak
  • 1bigBed broadPeak
  • 1tar
Organism
  • 390Homo sapiens
Biosample type
  • 212primary cell
  • 135tissue
  • 25in vitro differentiated cells
  • 19cell line
Organ
  • 106pancreas
  • 72epithelium
  • 28eye
  • 21liver
  • 20connective tissue
  • 10lung
  • 9blood
  • 9bodily fluid
  • 9kidney
  • 4bone element
  • 4skeleton
  • 3adipose tissue
  • 3brain
  • 2musculature of body
  • 1blood vessel
  • 1pituitary gland
  • 1skin of body
  • 1vasculature
  • 1vein
Project
  • 265AMP
  • 87HPAP
  • 29T1D
  • 10LungMap
Genome assembly (visualization)
  • 453hg19
  • GRCh38
Lab
  • 209AMP-T2D consortium
  • 87Klaus Kaestner, Upenn
  • 52Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 6Katalin Susztak, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 31inconsistent ontology term
  • 29audit script error
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

391 results

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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell48
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
pancreatic alpha cell22
pancreatic beta cell13
tissue
islet of Langerhans4671
liver20
retina15
pigmented layer of retina12
lung10
in vitro differentiated cells
adipocyte8
embryonic stem cell6
chondrocyte5
immature adipocyte2
Progenitor cell of Hypothalamus (neural progenitor cell)1
cell line
EndoC_BH118
GM128781
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