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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ATAC-seq
27
snATAC-seq
11
DNase-seq
2
FAIRE-seq
Assay category
614
DNA binding
371
Transcription
100
DNA accessibility
19
DNA methylation
1
3D chromatin structure
Date released
27
February, 2021
18
May, 2022
14
September, 2018
9
August, 2017
9
November, 2018
7
August, 2020
7
October, 2017
5
September, 2017
3
September, 2020
1
March, 2019
Available data
490
bed narrowPeak
387
bam
348
bigWig
240
bigBed narrowPeak
208
bed bed3+
207
bed broadPeak
205
bigBed broadPeak
100
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
100
Homo sapiens
Biosample type
60
primary cell
39
tissue
1
in vitro differentiated cells
Organ
61
pancreas
32
epithelium
4
connective tissue
4
liver
3
adipose tissue
3
brain
spleen
Project
63
AMP
37
HPAP
Genome assembly (visualization)
61
hg19
51
GRCh38
Lab
43
AMP-T2D consortium
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
assembly!
hg18
organ_slims!
spleen
target.investigated_as!
histone
BIOSAMPLE
ASSAY
100 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
27
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 1 more…
tissue
islet of Langerhans
20
1
1
body of pancreas
4
2
brain
2
liver
2
omental fat pad
1
1
+ See 4 more…
in vitro differentiated cells
adipocyte
1
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