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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ATAC-seq
55
snATAC-seq
23
DNase-seq
Assay category
506
DNA binding
390
Transcription
313
DNA accessibility
70
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Date released
70
August, 2021
60
May, 2022
55
May, 2020
25
February, 2023
20
June, 2019
16
January, 2021
16
May, 2021
15
October, 2019
11
May, 2023
10
April, 2020
7
August, 2020
3
September, 2020
2
March, 2019
1
August, 2017
1
July, 2019
1
October, 2017
Available data
84
bed narrowPeak
64
xls
60
zippedFastqFolder
32
bigWig
23
bam
21
bed broadPeak
20
bed bed3+
20
bigBed broadPeak
20
bigBed narrowPeak
12
fastq
12
tsv
Organism
312
Homo sapiens
Biosample type
153
primary cell
144
tissue
16
cell line
Organ
93
pancreas
90
kidney
73
epithelium
heart
36
blood vessel
36
vasculature
35
artery
13
brain
10
lung
8
blood
8
bodily fluid
1
connective tissue
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
204
AMP
70
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
hg19
364
GRCh38
Lab
121
AMP-T2D consortium
81
Katalin Susztak, Upenn
70
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
audit script error
22
inconsistent ontology term
assembly!
hg19
audit.ERROR.category!
audit script error
month_released!
February, 2020
organ_slims!
heart
BIOSAMPLE
ASSAY
313 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
primary cell
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
Langerhans cell
21
pancreatic beta cell
16
+ See 11 more…
tissue
kidney
75
6
islet of Langerhans
26
6
lung
10
pancreas
4
body of pancreas
2
+ See 15 more…
cell line
EndoC_BH1
16
See all biosamples
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