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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ATAC-seq
35
snATAC-seq
26
DNase-seq
Assay category
466
DNA binding
325
Transcription
211
DNA accessibility
30
DNA methylation
6
3D chromatin structure
Date released
70
August, 2021
60
February, 2023
May, 2020
23
June, 2019
16
January, 2021
15
October, 2019
11
May, 2023
10
April, 2020
2
March, 2019
1
August, 2017
1
August, 2022
1
July, 2019
1
October, 2017
Available data
122
bed narrowPeak
64
xls
26
bam
25
bigWig
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
23
bigBed narrowPeak
12
tsv
2
fastq
Organism
210
Homo sapiens
Biosample type
182
tissue
29
primary cell
cell line
Organ
90
kidney
38
heart
36
blood vessel
36
vasculature
35
artery
29
pancreas
13
brain
10
lung
8
blood
8
bodily fluid
8
epithelium
1
connective tissue
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
172
AMP
29
T1D
10
LungMap
Genome assembly (visualization)
419
GRCh38
hg19
Lab
Klaus Kaestner, Upenn
89
AMP-T2D consortium
81
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
6
inconsistent ontology term
1
audit script error
assembly!
hg19
biosample_type!
cell line
lab.title!
Klaus Kaestner, Upenn
month_released!
May, 2020
BIOSAMPLE
ASSAY
211 results
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ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney
75
6
coronary artery
35
islet of Langerhans
26
7
lung
10
pancreas
4
+ See 17 more…
primary cell
peripheral blood mononuclear cell
8
gabaergic neuron
3
glutamatergic neuron
3
kidney tubule cell
3
microglial cell/astrocyte
3
+ See 5 more…
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