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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 270ATAC-seq
  • 83snATAC-seq
  • 26DNase-seq
Assay category
  • 566DNA binding
  • 515Transcription
  • 379DNA accessibility
  • 78DNA methylation
  • 73D chromatin structure
  • 1DNA sequencing
Date released
  • 70August, 2021
  • 60February, 2023
  • 60May, 2022
  • 55May, 2020
  • 27February, 2021
  • 23June, 2019
  • 16January, 2021
  • 16May, 2021
  • 15October, 2019
  • 11May, 2023
  • 10April, 2020
  • 7August, 2020
  • 3September, 2020
  • 2March, 2019
  • 1August, 2017
  • 1August, 2022
  • 1July, 2019
  • 1October, 2017
Available data
  • 122bed narrowPeak
  • 64xls
  • 60zippedFastqFolder
  • 39fastq
  • 35bigWig
  • 26bam
  • 24bed broadPeak
  • 23bed bed3+
  • 23bigBed broadPeak
  • 23bigBed narrowPeak
  • 12tsv
Organism
  • 378Homo sapiens
Biosample type
  • 182tissue
  • 181primary cell
  • 16cell line
Organ
  • 94pancreas
  • 90kidney
  • 73epithelium
  • 38heart
  • 36blood vessel
  • 36vasculature
  • 35artery
  • 13brain
  • 10lung
  • 8blood
  • 8bodily fluid
  • 1connective tissue
  • 1eye
  • 1liver
  • 1pituitary gland
  • 1skin of body
Project
  • 243AMP
  • 97HPAP
  • 29T1D
  • 10LungMap
Genome assembly (visualization)
  • hg19
  • 441GRCh38
Lab
  • 160AMP-T2D consortium
  • 97Klaus Kaestner, Upenn
  • 81Katalin Susztak, Upenn
  • 29Kyle Gaulton, UCSD
  • 10Xin Sun, UCSD
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 28audit script error
  • 22inconsistent ontology term
assembly!
  • hg19
BIOSAMPLE
ASSAY

379 results

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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney756
coronary artery35
islet of Langerhans267
lung10
pancreas4
primary cell
Langerhans cell48
pancreatic alpha cell29
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
pancreatic beta cell16
cell line
EndoC_BH116
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