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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ATAC-seq
209
DNase-seq
5
FAIRE-seq
1
snATAC-seq
Assay category
1305
Transcription
1245
DNA binding
463
DNA accessibility
36
DNA methylation
23
3D chromatin structure
Date released
187
June, 2019
77
February, 2023
45
May, 2020
26
November, 2019
22
February, 2021
18
October, 2019
14
September, 2018
13
May, 2021
10
August, 2017
10
August, 2021
10
November, 2018
8
July, 2019
7
October, 2017
5
September, 2017
4
March, 2020
3
January, 2018
2
November, 2020
1
March, 2019
1
May, 2022
Available data
386
bed narrowPeak
370
bam
309
bigWig
241
bigBed narrowPeak
209
bed bed3+
206
bed broadPeak
206
bigBed broadPeak
45
fastq
12
bed bed3
4
bed bedgraph
2
tsv
1
tar
1
txt
Organism
463
Homo sapiens
Biosample type
301
tissue
114
primary cell
33
in vitro differentiated cells
15
cell line
Organ
80
kidney
77
heart
61
pancreas
58
vasculature
56
blood vessel
56
epithelium
49
artery
44
limb
36
brain
35
musculature of body
32
connective tissue
31
eye
18
ureter
12
bone element
12
skeleton
8
adipose tissue
8
liver
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
Project
463
AMP
Genome assembly (visualization)
403
hg19
354
GRCh38
Lab
462
AMP-T2D consortium
75
Katalin Susztak, Upenn
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Klaus Kaestner, Upenn
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
23
inconsistent ontology term
1
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
463 results
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ATAC-seq
DNase-seq
FAIRE-seq
snATAC-seq
tissue
coronary artery
36
2
islet of Langerhans
22
1
1
heart
18
retina
15
3
muscle of arm
17
+ See 59 more…
primary cell
monocyte
15
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 49 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
3
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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