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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ATAC-seq
27
DNase-seq
Assay category
209
Transcription
207
DNA binding
76
DNA accessibility
1
3D chromatin structure
Date released
24
June, 2019
14
September, 2018
13
May, 2021
7
August, 2020
5
September, 2017
4
October, 2019
3
August, 2017
3
September, 2020
2
November, 2020
1
February, 2021
Available data
66
bam
66
bed narrowPeak
60
bigWig
49
bigBed narrowPeak
32
fastq
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
1
bed bed3
Organism
76
Homo sapiens
Biosample type
335
tissue
76
primary cell
18
in vitro differentiated cells
12
cell line
Organ
49
epithelium
32
pancreas
10
kidney
8
connective tissue
6
vasculature
5
brain
4
blood vessel
3
heart
3
liver
2
vein
1
eye
1
musculature of body
Project
66
AMP
10
HPAP
Genome assembly (visualization)
107
hg19
76
GRCh38
Lab
66
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
month_released!
April, 2018
December, 2018
BIOSAMPLE
ASSAY
76 results
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ATAC-seq
DNase-seq
primary cell
monocyte
13
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
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