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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 234ATAC-seq
  • 207DNase-seq
Assay category
  • 1401Transcription
  • 1266DNA binding
  • 441DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Date released
  • 187June, 2019
  • 74August, 2021
  • 35February, 2023
  • 26November, 2019
  • 18February, 2021
  • 14October, 2019
  • 14September, 2018
  • 13May, 2021
  • 11May, 2023
  • 9November, 2018
  • 8October, 2017
  • 7August, 2017
  • 7August, 2020
  • 6July, 2019
  • 5September, 2017
  • 3September, 2020
  • 2March, 2019
  • 2November, 2020
Available data
  • 415bed narrowPeak
  • 318bam
  • 258bigWig
  • 231bigBed narrowPeak
  • 206bed broadPeak
  • 205bigBed broadPeak
  • 204bed bed3+
  • 64xls
  • 53fastq
  • 2bed bed3
Organism
  • 441Homo sapiens
Biosample type
  • 335tissue
  • 76primary cell
  • 18in vitro differentiated cells
  • 12cell line
Organ
  • 154kidney
  • 77heart
  • 67pancreas
  • 57vasculature
  • 55blood vessel
  • 51epithelium
  • 49artery
  • 44limb
  • 34brain
  • 33musculature of body
  • 18ureter
  • 14connective tissue
  • 8bone element
  • 8liver
  • 8skeleton
  • 5adipose tissue
  • 4eye
  • 3nerve
  • 2spleen
  • 2vein
Project
  • 431AMP
  • 10HPAP
Genome assembly (visualization)
  • 453hg19
  • 441GRCh38
Lab
  • 353AMP-T2D consortium
  • 75Katalin Susztak, Upenn
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 15inconsistent ontology term
  • 1inconsistent replicate
BIOSAMPLE
ASSAY

441 results

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Clear Filters
ATAC-seq
DNase-seq
tissue
kidney7513
coronary artery362
islet of Langerhans221
heart18
muscle of arm17
primary cell
monocyte13
pancreatic alpha cell13
pancreatic beta cell10
pancreatic acinar cell5
pancreatic ductal cell4
in vitro differentiated cells
neural progenitor cell10
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
adipocyte1
cardiac precursors (cardiac muscle cell)1
cardiomyocytes (cardiac muscle cell)1
cell line
smooth muscle cell of the coronary artery8
EndoC_BH11
HepG21
Panc11
glomerular visceral epithelial cell1
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